环境16S rDNA和16S rcDNA序列分析湖光岩玛珥湖的浮游细菌组成Bacterioplankton Composition in Huguangyan Maar Lake Revealed by Environmental 16S rDNA and 16S rcDNA Sequence Analysis
秦青英,曾永辉,郭倩茹,简纪常,鲁义善,吴灶和
摘要(Abstract):
通过提取环境总16S rDNA和总16S rRNA分别构建DNA克隆文库和反转录cDNA文库,并进行克隆测序和序列分析,探讨湖光岩玛珥湖浮游细菌和浮游活性细菌的遗传多样性。结果表明:构建两个水层的4个克隆文库,即1 m和10 m水层总菌的16S rDNA文库和总活性菌的16S rcDNA文库,共获得413条序列,分属15门、32目、52科;1 m水层的rDNA文库与rcDNA文库中Verrucomicrobia类群所占比例最大(36.8%和32.1%),其次为Alphaproteobacteri(a 15.1%和16%)和Betaproteobacteri(a 17.9%和16%);在10 m水层的2个文库中,Alphaproteobacteria类群均占绝对优势,分别为63.5%(rDNA)和43.8%(rcDNA),其次为Verrucomicrobia(11.5%和14.3%),其他细菌类群包括Acidobacteria、Chloroflexi、Firmicutes、待定门OD1、Planctomycetes、Spirochetes和Deltaproteobacteria,比例在0.8%~3.8%之间;在科的水平上,SAR11为湖光岩玛珥湖最为丰富的类群,占总克隆数的26.9%,其中在10 m水层的比例高达51.5%。序列同源性分析表明,绝大多数序列(89.8%)来源于新种,其中19.6%的序列可能来自于新属,69%的序列可能来自于全新的科。湖光岩玛珥湖浮游细菌群落结构较为独特,有大量的浮游细菌种类尚未获得相应的纯培养物,蕴含着丰富而新颖的微生物资源。
关键词(KeyWords): 湖光岩玛珥湖;浮游细菌;浮游活性菌;16S rDNA;16S rRNA;系统发育分析;遗传多样性
基金项目(Foundation): 国家自然科学基金青年项目(No.30900045),广东省自然科学基金博士启动项目(No.B09292)
作者(Author): 秦青英,曾永辉,郭倩茹,简纪常,鲁义善,吴灶和
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