马氏珠母贝Perlucin基因序列特征及其SNP与耐低温性状的关系Sequence Characteristics of Perlucin Gene in Pinctada fucata martensii and Relationship between Its SNPs and Low Temperature Tolerance
王成,赖卓欣,宋欣霖,钟如卓,郑哲,王庆恒
摘要(Abstract):
【目的】克隆马氏珠母贝(Pinctada fucata martensii)新的凝集素分子基因,命名为Perlucin,研究在低温胁迫下马氏珠母贝Perlucin的表达以及与抗低温性状相关的单核苷酸多态性(SNP)位点。【方法】根据马氏珠母贝基因组中Perlucin基因序列设计引物,克隆Perlucin基因全长;用生物信息学方法分析Perlucin的结构和理化特征;设计17和22℃(对照)2个温度组,对马氏珠母贝进行低温胁迫实验,用实时荧光定量PCR检测低温胁迫下Perlucin表达量的变化;筛选和比较分析马氏珠母贝耐低温选育系(R)F3和北部湾野生群体(W)的Perlucin外显子区的SNP位点和单倍型。【结果】马氏珠母贝Perlucin全长631 bp,编码152个氨基酸;包含1个信号肽和1个C型凝集素结构域。同源分析表明,马氏珠母贝Perlucin与紫贻贝(Mytilus galloprovincialis)Perlucin的亲缘性最近。Perlucin在鳃中表达量最高,其次为足和肝胰腺。低温胁迫时,鳃组织中Perlucin基因在17℃低温组的表达量呈先升高后降低的趋势,在12 h时达到最高并显著高于22℃对照组(P <0.05),表明Perlucin可能参与马氏珠母贝的低温响应过程。对Perlucin外显子区的SNP进行分析,共得到30个SNP,其中13个SNP位点的基因型频率在R和W群体间差异显著(P <0.05)。【结论】Perlucin是参与调节马氏珠母贝低温适应过程中的候选基因,筛选出两个SNP位点g.40078856、g.40078945。
关键词(KeyWords): 马氏珠母贝;Perlucin;基因克隆;低温胁迫;SNP
基金项目(Foundation): 广东省自然科学基金(2023A1515030048);; 广东省普通高校重点领域专项(2020ZDZX1045);; 广东省现代农业产业技术体系-贝藻类产业创新团队项目(KJ146);; 湛江市科技计划(2022A01010)
作者(Author): 王成,赖卓欣,宋欣霖,钟如卓,郑哲,王庆恒
参考文献(References):
- [1] ODINTSOVA N A, BELOGORTSEVA N I, KHOMENKO A V, et al. Effect of lectin from the ascidian on the growth and the adhesion of HeLa cells[J]. Molecular and Cellular Biochemistry, 2001, 221(1):133-138.
- [2] WANG L L, WANG L L, YANG J L, et al. A multi-CRD C-type lectin with broad recognition spectrum and cellular adhesion from Argopecten irradians[J]. Developmental&Comparative Immunology, 2012, 36(3):591-601.
- [3] ZHAN M Y, SHAHZAD T, YANG P J, et al. A single-CRD C-type lectin is important for bacterial clearance in the silkworm[J]. Developmental&Comparative Immunology,2016, 65:330-339.
- [4] YU X Q, KANOST M R. Immulectin-2, a lipopolysaccharidespecific lectin from an insect, Manduca sexta, is induced in response to gram-negative bacteria[J]. Journal of Biological Chemistry, 2000, 275(48):37373-37381.
- [5] YU X Q, TRACY M E, LING E J, et al. A novel C-type immulectin-3 from Manduca sexta is translocated from hemolymph into the cytoplasm of hemocytes[J]. Insect Biochemistry and Molecular Biology, 2005, 35(4):285-295.
- [6] BI J X, NING M X, XIE X J, et al. A typical C-type lectin,perlucin-like protein, is involved in the innate immune defense of whiteleg shrimp Litopenaeus vannamei[J]. Fish&Shellfish Immunology, 2020, 103:293-301.
- [7]林师,张丽莉,王国栋.杂色鲍两种perlucin基因的克隆与表达分析[J].生物技术通报, 2016, 32(12):113-123.
- [8]赵泽慧,张爱娇,杨雨澄,等.香港牡蛎(Crassostrea hongkongensis)新型凝集素ChPerlucin的基因克隆与功能研究[J].热带海洋学报, 2022, 41(1):42-51.
- [9] METZGER, DAVID C. Characterizing the effects of ocean acidification in larval and juvenile Manila clam, Ruditapes philippinarum, using a transcriptomic approach[M]. Seattle:University of Washington, 2012.
- [10] MAAS A E, LAWSON G L, TARRANT A M. Transcriptomewide analysis of the response of the thecosome pteropod Clio pyramidata to short-term CO2exposure[J]. Comparative Biochemistry and Physiology Part D:Genomics and Proteomics, 2015, 16:1-9.
- [11] MOYA A, HOWES E L, LACOUE-LABARTHE T, et al.Near-future pH conditions severely impact calcification,metabolism and the nervous system in the pteropod Heliconoides inflatus[J]. Global Change Biology, 2016, 22(12):3888-3900.
- [12] GONCALVES P, THOMPSON E L, RAFTOS D A. Contrasting impacts of ocean acidification and warming on the molecular responses of CO2-resilient oysters[J]. BMC Genomics, 2017, 18(1):431.
- [13] BITTER M C, KAPSENBERG L, SILLIMAN K, et al.Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification[J]. The American Naturalist, 2021, 197(4):486-501.
- [14] LóPEZ-LANDAVERY E A, CARPIZO-ITUARTE E J,PéREZ-CARRASCO L, et al. Acidification stress effect on umbonate veliger larval development in Panopea globosa[J]. Marine Pollution Bulletin, 2021, 163:111945.
- [15] LIU X Y, LI L, LI A, et al. Transcriptome and gene coexpression network analyses of two wild populations provides insight into the high-salinity adaptation mechanisms of Crassostrea ariakensis[J]. Marine Biotechnology, 2019,21(5):596-612.
- [16]李宁,聂鸿涛,黎强,等.低温胁迫对不同群体菲律宾蛤仔存活率及脂肪酸代谢相关基因SCD、FAD和ACC表达的影响[J].大连海洋大学学报, 2022, 37(4):636-642.
- [17]夏丹丹,马爱军,黄智慧,等.环境胁迫对大菱鲆C-型凝集素功能的影响[J].水产学报, 2017, 41(2):161-170.
- [18] FIELDS P A, BURMESTER E M, COX K M, et al. Rapid proteomic responses to a near-lethal heat stress in the salt marsh mussel Geukensia demissa[J]. The Journal of Experimental Biology, 2016, 219(Pt 17):2673-2686.
- [19] MENIKE U, LEE Y, OH C, et al. Oligo-microarray analysis and identification of stress-immune response genes from Manila clam(Ruditapes philippinarum)exposure to heat and cold stresses[J]. Molecular Biology Reports,2014, 41(10):6457-6473.
- [20]杨创业,吴丹阳,王庆恒,等.马氏珠母贝生长性状遗传力估计[J].中国农学通报, 2015, 31(23):25-29.
- [21]赖卓欣.马氏珠母贝耐低温选育系的选择印记分析[D].湛江:广东海洋大学, 2020.
- [22]刘雅.马氏珠母贝低温适应性分子机制的初步研究[D].湛江:广东海洋大学, 2018.
- [23] DU X D, FAN G Y, JIAO Y, et al. The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization[J]. GigaScience,2017, 6(8):1-12.
- [24]陈琨,赖卓欣,刘雅,等.马氏珠母贝PEPCK基因序列特征及其在耐低温品系的选择印记分析[J].中国水产科学, 2022, 29(1):58-69.
- [25] LUO T, YANG H J, LI F, et al. Purification, characterization and cDNA cloning of a novel lipopolysaccharide-binding lectin from the shrimp Penaeus monodon[J]. Developmental&Comparative Immunology, 2006, 30(7):607-617.
- [26] TSUTSUI S, IWAMOTO K, NAKAMURA O, et al. Yeastbinding C-type lectin with opsonic activity from Conger eel(Conger myriaster)skin mucus[J]. Molecular Immunology,2007, 44(5):691-702.
- [27] QU B Z, YANG S S, MA Z Y, et al. A new LDLa domaincontaining C-type lectin with bacterial agglutinating and binding activity in amphioxus[J]. Gene, 2016, 594(2):220-228.
- [28] HUANG Y, SHI Y, HU S F, et al. Characterization and functional analysis of two transmembrane C-type lectins in obscure puffer(Takifugu obscurus)[J]. Frontiers in Immunology, 2020, 11:436.
- [29] ZHAO Z Y, YIN Z X, WENG S P, et al. Profiling of differentially expressed genes in hepatopancreas of white spot syndrome virus-resistant shrimp(Litopenaeus vannamei)by suppression subtractive hybridisation[J]. Fish&Shellfish Immunology, 2007, 22(5):520-534.
- [30] DODENHOF T, DIETZ F, FRANKEN S, et al. Splice variants of perlucin from Haliotis laevigata modulate the crystallisation of CaCO3[J]. PLoS One, 2014, 9(5):e97126.
- [31]潘晓艳,郑哲,田荣荣,等. miR-210在马氏珠母贝外套膜矿化机制中的结构和功能预测[J].广东海洋大学学报, 2016, 36(3):9-14.
- [32] TISCAR P G, MOSCA F. Defense mechanisms in farmed marine molluscs[J]. Veterinary Research Communications,2004, 28(1):57-62.
- [33]郝振林,程操,田莹,等.不同高温水平下虾夷扇贝鳃的显微观察[J].河北渔业, 2018(8):17-20.
- [34]陈晓敏,刘建勇,张嘉晨,等.凡纳滨对虾过氧化氢酶基因单核苷酸多态性及其与耐低溶氧性状的相关性[J].广东海洋大学学报, 2016, 36(6):16-20.
- [35] DU X D, LI L, ZHANG S D, et al. SNP identification by transcriptome sequencing and candidate gene-based association analysis for heat tolerance in the bay scallop Argopecten irradians[J]. PLoS One, 2014, 9(8):e104`960.
- [36]杨永强,王巍杰,徐长波.单核苷酸多态性研究进展[J].化学与生物工程, 2009, 26(8):19-21.
- [37] WANG D X, JOHNSON A D, PAPP A C, et al. Multidrug resistance polypeptide 1(MDR1, ABCB1)variant 3435C> T affects mRNA stability[J]. Pharmacogenetics and Genomics, 2005, 15(10):693-704.
- [38] OVERWAY E M, BOSMA K J, CLAXTON D P, et al.Nonsynonymous single-nucleotide polymorphisms in the G6PC2 gene affect protein expression, enzyme activity, and fasting blood glucose[J]. Journal of Biological Chemistry,2022, 298(2):101534.
- [39] LAI Z X, ADZIGBLI L, CHEN Q Y, et al. Identification and allelic variants associated with cold tolerance of PmPIAS in Pinctada fucata martensii[J]. Frontiers in Physiology, 2021, 12:634838.