3种星虫线粒体16S rRNA、COI和Cyt b基因片段的序列比较Sequence Comparison and Phylogenetic Analysis of mtDNA 16SrRNA and CO I and Cyt b Gene Fragments in Three Species of Sipuncula
陈子安,杜晓东,王庆恒,邓岳文
摘要(Abstract):
对裸体方格星虫(Sipunculus nudus)、可口革囊星虫(Phascolosoma esculenta)和澳洲管体星虫(Siphonosoma australe)的线粒体16S rRNA、COI和细胞色素b(Cytb)基因片段序列进行比较,并对其系统发生进行了初步探讨。采用PCR方法得到总长度分别为531~544bp(16S)、652~675bp(COI)和406~453bp(Cytb)的线粒体片段。片段碱基A+T比例较高(16S rRNA基因58.3%,COI基因56.9%,Cytb基因59.5%)。16S rRNA片段存在169个碱基变异位点(其中包括167个简约信息位点)和44个碱基插入/缺失,种内个体间变异较小;COI片段有512个碱基(333个简约信息位点)存在变异,79个碱基插入/缺失;Cytb片段存在347个碱基(318个简约信息位点)变异位点,16个碱基插入/缺失。数据分析结果支持3种星虫和环节动物的分类地位较近,与软体动物较远的分类观点。此外,裸体方格星虫与澳洲管体星虫之间亲缘关系较近(D=0.3159、0.3156、0.2361)。认为3种星虫线粒体16S rRNA、COI和Cytb基因在种间存在明显的多态性,证实了三种基因序列均普遍适用于星虫种及以上阶元的系统学分析。
关键词(KeyWords): 星虫;线粒体;16SrRNA基因;COI基因;Cytb基因;基因序列
基金项目(Foundation): 广东省自然科学基金(B0609144)
作者(Author): 陈子安,杜晓东,王庆恒,邓岳文
参考文献(References):
- [1]李凤鲁.中国沿海方格星虫属(星虫动物门)的研究[J].青岛海洋大学学报,1990,20(1):93-99.
- [2]山东海洋学院.无脊椎动物学[M].北京:农业出版社,1961:179-181.
- [3]刘凌云,郑光美.普通动物学[M].北京:高等教育出版社,1997:194-195.
- [4]Palumbi S R.Nucleic acids II:the polymerase chain reaction[M]//Hillis D M,Moritz C,Mable B K,ed.Molecular systematics.Sunderland,Massachusetts,USA:Sinauer associates,1996:205-247.
- [5]FOLMER O,BLACK M,HOEH W,LUTZ R,VRIJENHOEK R.DNA primers for amplification of mitochondrial cytochrome coxidase subunit I from diverse metazoan invertebrates[J].Mol Mar Biol Biotech,1994,3:294-299.
- [6]Boore J L,Brown W M.Complete DNA sequence of the mitochondrial genome of the black chiton,Katharina tunicate[J].Genetics,1994,138:423-443.
- [7]Howland D E,Hewitt G M.Phylogeny of the colepters based on mitochondrial cytochrome oxidase I sequence data[J].Insect Mol Bio,1995,4:203-205.
- [8]Spicer G B.Phylogenetic utility of the mitochondrial cytochrome oxidase gene:molecular evolution of the Drosophila buzzatii species complex[J].Mol Evol,1995,41:749-759.
- [9]Zheng X D,Wang R C,Wang X F,et al.Genetic variation in population of the common Chinese cuttlefish Sepiella maindroni(Mollusca:Cephalopoda)using allozymes and mitochondrial DNA sequence analysis[J].Shellfish research,2001,20(3):1159-1165.
- [10]Anderson F E.Phylogeny and historical biogeography of the loliginid squids(Mollusca:Cephalopoda)based on mitochondrial DNA sequence data[J].Molecular phylogenetic and evolution,2000,15(2):191-214.
- [11]Zheng X D,Xiao S,Chen B,et al.Study on CO I and16S rRNA gene sequence of thecommon Chinese cuttlefish Sepiella maindroni(Mollusca:Cephalopoda)[C]//Transaction of the Chinese society ofmalacology.Beijing:Ocean press,2001:64~69.
- [12]孔晓瑜,刘亚军,喻子牛,等.栉孔扇贝和海湾扇贝线粒体DNA16S rRNA基因片段序列研究[C]//中国贝类学会主编.贝类学论文集:第IX辑.北京:海洋出版社,2001:59-63.
- [13]高天祥,张秀梅,吉崎悟朗,等.中华绒螯蟹和日本绒螯蟹线粒体12S rRNA基因序列研究[J].中国海洋大学学报,2000,30(1):43-47.
- [14]Boulding E G.Genetic variation in bottlenecked and two wild populations of the Japanese scallop(Patinop eteny essoensis):empirical parameter estimates from coding regions of mitochondrial DNA[J].Can Fish Aquat Sci,1993,50:1147-1157.
- [15]Gao T,Zhang X,Chen D,et al.Study on mitochondrial DNA cytochrome b gene of Chinese sea bass,Lateolabrax sp1[J].J Ocean Uni Qingdao,2001(2):185-189.
- [16]高天翔,张秀梅,朱杰,等.养殖牙鲆细胞色素b基因序列的初步研究[J].中国水产科学,2003,10(2):93-96.
- [17]Station J L.Phylogenetic analysis of the mitochondrial cytochrome c oxidase subunit I gene from13Sipunculan genera intra-and interphylum relationships[J].Invertebrate biology,2003,122(3):252-264.
- [18]Anja Schulze,Edward B Cutler,Gonzalo Giribet.Phylogeny of Sipunculus worms:A combined analysis of four gene regions and morphology[J].Molecular phylogenetics and evolution,2007,42:171-192.
- [19]Boore J L,Station J L.The Mitochondrial genome of the Sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca[J].Molecular biology and evolution,2002,19:22;127-137.